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If you open multiple instances of Domino Designer, you cannot delete a database. You should only have one instance of Designer open when you want to delete a database. If you do delete a database with more than one Designer instance open, the database is not removed from your Most Recently Used list.

To remove the database from the Most Recently Used list, you need to add more databases to the list so that there are more than five databases in the list. When you close the Designer and re-open, only the five most recently-used databases will be in the folder.